species:   Artha
pid:       MI0015818
parent:    ath-MIR3440b
paralog:   
locus:     3:6217476-6217600
matures:   ['UUUUCUUGGCCCAUCCACUUC', 'AGUGGAUUGGUCAAGGGAAGC']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 3:6217476-6217600

0 out of bounds
4 alignments
4 proper strand
2 stranded perfect matches

                     ***********************                                   ***********************                       
UCUGGUAUUUUGCUCAAGUAUGGUUUUCUUGGCCCAUCCACUUCUAAUGUGUUUUGUAACUAAUGCAAAAUGUGCAUUAGAAGUGGAUUGGUCAAGGGAAGCGUACUUGUGCAAAAUGCGGCAGU
.((((((((((((.((((((((.(((((((((((.(((((((((((((((((((((((.....))))))))..))))))))))))))).))))))))))).)))))))).)))))))))..))).
-----------------------UUUUCUUGGCCCAUCCACUUC--------------------------------------------------------------------------------- l=21 a=2 c
---------------------------------------------------------------------------------AGUGGAUUGGUCAAGGGAAGC----------------------- l=21 a=0 c*
-----------------------UUUUCUUGGCCCAUCCACUUC--------------------------------------------------------------------------------- l=21 a=2 ma
---------------------------------------------------------------------------------AGUGGAUUGGUCAAGGGAAGC----------------------- l=21 a=0 ma*

-----------------------UUUUCUUGGCCCAUCCACUUC--------------------------------------------------------------------------------- l=21 a=2 (c,ma)
---------------------------------------------------------------------------AUUAGAAGUGGAUUGGUCAAGu---------------------------- l=22 a=2 

mb-01111
ax-1011011
ku-01
ss-111111111100
fn-011
